Pull requests: nextflow-io/nextflow

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Pull requests list

Upgrade to Groovy 5
#6220 openedJun 25, 2025by bentsherman • Draft
 1
Fix false error when using stdin/stdout in a tuple backport/25.04 backport/25.04.5
#6219 openedJun 25, 2025by bentsherman Loading…
 1
local-gpu-executor repects CUDA_VISIBLE_DEVICES when set
#6218 openedJun 25, 2025by thealanjason Loading…
 1
Rename IncludeModuleNode to IncludeEntryNode
#6217 openedJun 25, 2025by bentsherman Loading…
 1
Fix apptainer and singularity --no-https option software/singularity
#6216 openedJun 25, 2025by steven-pilger Loading…
1
2
Resolve auth for Git providers that use tokens software/git
#6212 openedJun 24, 2025by tcrespog Loading…
@tcrespog
 1
Sanitize labels in AWS batch executor/aws-batch
#6211 openedJun 23, 2025by edmundmiller Loading…
@edmundmiller
 9
Add support for Bitbucket API tokens software/git
#6209 openedJun 23, 2025by tcrespog Loading…
@tcrespog
 2
Reuse TowerClient to handle all license token requests
#6207 openedJun 23, 2025by jordeu Loading…
 3
Add container registryOverride option
#6205 openedJun 20, 2025by pditommaso Loading…
 3
Add git response max length software/git
#6190 openedJun 17, 2025by pditommaso • Draft
 2
error message of azcopy is no longer hidden executor/azure-batch storage/azure
#6187 openedJun 16, 2025by adamrtalbot Loading…
1
1
Allow docker registry to override fully-qualified container images software/docker
#6178 openedJun 6, 2025by bentsherman Loading…
1
4
fix: Cap azcopy memory usage at 80% of container memory
#6177 openedJun 6, 2025by adamrtalbot Loading…
1
5
Add namespaces to nf-lang docs
#6176 openedJun 6, 2025by bentsherman Loading…
 2
♻️ refactor(cli): add -with-seqera and SEQERA_ACCESS_TOKEN as aliases for nextflow run
#6168 openedJun 5, 2025by kenibrewer Loading…
 1
Upgrade to AWS Java SDK v2
#6165 openedJun 5, 2025by jorgee • Draft
 19
Migration guide for workflow outputs docs
#6162 openedJun 5, 2025by bentsherman Loading…
 23
feat: Azure Batch eagerly terminates jobs after all tasks have been submitted executor/azure-batch
#6159 openedJun 4, 2025by adamrtalbot Loading…
1
15
Add pixi support
#6157 openedJun 3, 2025by edmundmiller • Draft
1
@edmundmiller
 4
Ensure that groupKey objects are treated as their groupTarget for the purposes of joins and combines
#6139 openedMay 29, 2025by robsyme Loading…
 13
POC: Global Cache
#6100 openedMay 19, 2025by jorgee • Draft
 1
POC: Support pipeline archives instead of git repos or local paths software/git
#6093 openedMay 16, 2025by adamrtalbot • Draft
 2
Refactor lineage JSON serialization with a root element including version, kind and spec properties
#6075 openedMay 14, 2025by jorgee Loading…
 5
Include WorkflowMetadata in lineage records
#6069 openedMay 13, 2025by jorgee • Draft
1 task
 3
ProTip! Exclude everything labeled bug with -label:bug.