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Fix tests for EddyQuad in interfaces/fsl/epi.py
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Adam Richie-Halford committedJan 21, 2019
commit 4c197753d988b0a73c267470f6a5c299afe30a61
Original file line numberDiff line numberDiff line change
Expand Up@@ -1379,18 +1379,19 @@ class EddyQuad(FSLCommand):
>>> from nipype.interfaces.fsl import EddyQuad
>>> quad = EddyQuad()
>>> quad.inputs.base_name = 'eddy_corrected'
>>> quad.inputs.idx_file = 'index.txt'
>>> quad.inputs.param_file = 'encfile.txt'
>>> quad.inputs.mask_file = 'mask.nii.gz'
>>> quad.inputs.bval_file = 'dwi.bval'
>>> quad.inputs.bvec_file = 'dwi.bvec'
>>> quad.inputs.idx_file = 'epi_index.txt'
>>> quad.inputs.param_file = 'epi_acqp.txt'
>>> quad.inputs.mask_file = 'epi_mask.nii'
>>> quad.inputs.bval_file = 'bvals.scheme'
>>> quad.inputs.bvec_file = 'bvecs.scheme'
>>> quad.inputs.output_dir = 'eddy_corrected.qc'
>>> quad.inputs.field = 'field.nii.gz'
>>> quad.verbose = True
>>> quad.inputs.field = 'fieldmap_phase_fslprepared.nii'
>>> quad.inputs.verbose = True
>>> quad.cmdline # doctest: +ELLIPSIS
'eddy_quad eddy_corrected --eddyIdx=index.txt --eddyParams=encfile.txt \
--mask=mask.nii.gz --bvals=dwi.bval --bvecs=dwi.bvec \
--output-dir=eddy_corrected.qc --field=field.nii.gz --verbose'
'eddy_quad eddy_corrected --bvals=bvals.scheme --bvecs=bvecs.scheme \
--field=fieldmap_phase_fslprepared.nii --eddyIdx=epi_index.txt \
--mask=epi_mask.nii --output-dir=eddy_corrected.qc --eddyParams=epi_acqp.txt \
--verbose'
>>> res = quad.run() # doctest: +SKIP

"""
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