Merged

FIX: Update ApplyVDM to handle 4D inputs #3500

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f0da0c7
extend apply VDM functionality to imaging data containing multiple fr…
Aug 29, 2022
adea98e
undone some changes that were not needed
Sep 1, 2022
970ea4f
Revert style changes
effigiesSep 5, 2022
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Original file line numberDiff line numberDiff line change
Expand Up@@ -259,10 +259,10 @@ class ApplyVDMInputSpec(SPMCommandInputSpec):

in_files = InputMultiObject(
ImageFileSPM(exists=True),
field="data.scans",
field='data.scans',
mandatory=True,
copyfile=True,
desc="list of filenames to apply the vdm to",
desc='list of filenames to apply the vdm to',
)
vdmfile = File(
field="data.vdmfile",
Expand DownExpand Up@@ -337,7 +337,11 @@ class ApplyVDM(SPMCommand):
def _format_arg(self, opt, spec, val):
"""Convert input to appropriate format for spm"""

if opt in ["in_files", "vdmfile"]:
if opt == 'in_files':
return scans_for_fnames(
ensure_list(val), keep4d=False, separate_sessions=False
)
if opt == 'vdmfile':
return scans_for_fname(ensure_list(val))
return super(ApplyVDM, self)._format_arg(opt, spec, val)

Expand Down