@@ -4,6 +4,12 @@
 # Required
 version: 2
 
+# Set the OS, Python version and other tools you might need
+build:
+os: ubuntu-22.04
+tools:
+python: "3.10"
+
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
 configuration: doc/conf.py
@@ -12,9 +18,10 @@ sphinx:
 formats:
 - htmlzip
 
-# Optionally set the version of Python and requirements required to build your docs
+# Optional but recommended, declare the Python requirements required
+# to build your documentation
+# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
 python:
-version: 3.7
 install:
 - requirements: doc/requirements.txt
 - method: pip

@@ -147,12 +147,12 @@ def get_nipype_gitversion():
 "traits>=%s,<%s,!=5.0" % (TRAITS_MIN_VERSION, TRAITS_MAX_VERSION),
 "filelock>=3.0.0",
 "etelemetry>=0.2.0",
-"looseversion",
+"looseversion!=1.2",
 ]
 
 TESTS_REQUIRES = [
 "codecov",
-"coverage<5",
+"coverage",
 "pytest",
 "pytest-cov",
 "pytest-env",

@@ -329,7 +329,11 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
 desc="Gzip compress images - [y=pigz, i=internal, n=no, 3=no,3D]",
 )
 merge_imgs = traits.Enum(
-0, 1, 2,
+0,
+1,
+2,
+default=0,
+usedefault=True,
 argstr="-m %d",
 desc="merge 2D slices from same series regardless of echo, exposure, etc. - [0=no, 1=yes, 2=auto]",
 )
@@ -393,7 +397,7 @@ class Dcm2niix(CommandLine):
 >>> converter.inputs.compression = 5
 >>> converter.inputs.output_dir = 'ds005'
 >>> converter.cmdline
-'dcm2niix -b y -z y -5 -x n -t n -m n -o ds005 -s n -v n dicomdir'
+'dcm2niix -b y -z y -5 -x n -t n -m 0 -o ds005 -s n -v n dicomdir'
 >>> converter.run() # doctest: +SKIP
 
 In the example below, we note that the current version of dcm2niix
@@ -406,7 +410,7 @@ class Dcm2niix(CommandLine):
 >>> converter.inputs.compression = 5
 >>> converter.inputs.output_dir = 'ds005'
 >>> converter.cmdline
-'dcm2niix -b y -z y -5 -x n -t n -m n -o ds005 -s n -v n .'
+'dcm2niix -b y -z y -5 -x n -t n -m 0 -o ds005 -s n -v n .'
 >>> converter.run() # doctest: +SKIP
 """
 
@@ -421,7 +425,6 @@ def version(self):
 def _format_arg(self, opt, spec, val):
 bools = [
 "bids_format",
-"merge_imgs",
 "single_file",
 "verbose",
 "crop",

@@ -116,13 +116,13 @@ def test_ProbTrackX2_inputs():
 argstr="--randfib=%d",
 ),
 random_seed=dict(
-argstr="--rseed",
+argstr="--rseed=%d",
 ),
 s2tastext=dict(
 argstr="--s2tastext",
 ),
 sample_random_points=dict(
-argstr="--sampvox",
+argstr="--sampvox=%.3f",
 ),
 samples_base_name=dict(
 argstr="--samples=%s",

@@ -41,7 +41,7 @@ def test_Dcm2niix_inputs():
 argstr="-i",
 ),
 merge_imgs=dict(
-argstr="-m",
+argstr="-m %d",
 usedefault=True,
 ),
 out_filename=dict(

@@ -16,11 +16,8 @@
 template = funcfile
 transfm = funcfile
 
-from . import decorators
 from .utils import package_check, TempFATFS
 
-skipif = decorators.dec.skipif
-
 
 def example_data(infile="functional.nii"):
 """returns path to empty example data files for doc tests