longread

WYSIWYG block editor jQuery plugin.

Rust bindings to minimap2 library

STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

An analysis pipeline for Nanopore direct-RNA sequencing

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes

10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS..io/AsaruSim/

iSofOrmS annoTAtoR pipeline Aucouturier, C., Soirat, N., Castéra, L. et al. Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline. BMC Genomics 25, 909 (2024).

Nextflow Pipeline for Strain Resolution from Long Reads

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing

Statistical Quality Utility for Ideal Reference matrix Enhancement (for use with HyLoRD)

The web genome viewer is live at https://icemduru..io/listeria_ro15_transcript/

🏭 article about Factory Records label

Research-longread about renewables developpement in Russia

A Hybrid Approach for Cell Type Deconvolution in Long-Read (ONT) Methylation Data